You ever bite into something and instantly know it’s going to be your new obsession? That’s exactly what happens with Double Chocolate Chip Sourdough Bagels. They combine the rich, deep flavor of cocoa, the satisfying chew of sourdough, and melty chocolate chips in every bite. Whether you’re a sourdough enthusiast or just looking for a new way to satisfy your chocolate cravings, this recipe is a winner.
Unlike traditional bagels, the sourdough in this recipe adds a subtle tangy depth that balances out the sweetness, making them not too rich but just right. The long fermentation process also gives them a fantastic texture—chewy on the inside, slightly crisp on the outside, and packed with chocolate goodness.
Nutritional Benefits of These Bagels
While they feel like an indulgence, these bagels have some solid ingredients that bring more than just flavor:
- Sourdough Starter – A natural fermentation agent that supports gut health and makes these bagels easier to digest.
- Dutch-Process Cocoa – Gives that deep, dark chocolate flavor while adding antioxidants.
- Semi-Sweet Chocolate Chips – Just enough sweetness without going overboard.
- Whole Wheat Flour (optional swap) – Adds fiber while keeping the texture soft.
- Honey or Maple Syrup – Natural sweeteners that pair perfectly with chocolate.
If you love unique, homemade bagels, you’ll also want to check out these Banana Bread Cinnamon Crunch Bagels—another must-try for breakfast lovers!
Table of Contents
Why You’ll Love These Double Chocolate Chip Sourdough Bagels
Let’s be real—Double Chocolate Chip Sourdough Bagels are basically a dream come true for chocolate lovers. They’ve got everything you want in a bagel: a perfect balance of rich chocolate flavor, chewy texture, and melty chocolate chips in every bite. But what really makes them special? The sourdough.
The Sourdough Difference
Unlike regular chocolate bagels, these beauties have a slight tang from the sourdough fermentation, which enhances the deep cocoa flavor. The natural fermentation also makes them easier to digest and gives them an incredible texture—crispy on the outside, chewy on the inside, and soft where the chocolate chips melt into the dough.
Perfect for Any Time of Day
- Breakfast – Toasted with a spread of cream cheese or peanut butter.
- Brunch – Serve them with a drizzle of honey and fresh berries for a fancy touch.
- Dessert – Because honestly, why not? A little Nutella never hurt anybody.
- Snack – Grab one on the go with your morning coffee.
Naturally Sweet, But Not Overwhelming
These bagels hit that sweet spot (literally) where they feel indulgent but not like a sugar overload. Since they use honey or maple syrup instead of refined sugar, the sweetness is subtle and pairs beautifully with the cocoa and chocolate chips.
If you love sourdough-based treats, check out this Zucchini Banana Bread in a Jar—a fun twist on classic banana bread with a healthy kick!
Ingredients for Double Chocolate Chip Sourdough Bagels
To make these Double Chocolate Chip Sourdough Bagels, you’ll need a mix of classic bagel ingredients and a few chocolatey add-ins. The result? A perfectly chewy, slightly tangy, and rich chocolate bagel that’s loaded with melty chocolate chips.
The Base Ingredients
- Sourdough Starter (Active & Bubbly) – This gives the bagels their signature chew and deep flavor. If your starter has been in the fridge, feed it 4-6 hours before baking.
- All-Purpose Flour – Provides structure while keeping the bagels soft. You can swap in some whole wheat flour for extra fiber.
- Dutch-Process Cocoa Powder – For a deep, rich chocolate flavor. If using natural cocoa, the flavor will be slightly more acidic.
- Honey or Maple Syrup – Adds a subtle sweetness and keeps the dough moist.
- Salt – Essential for balancing the flavors.
The Chocolate Boost
- Semi-Sweet Chocolate Chips – The best part! These melt into the dough while baking, giving bursts of chocolate in every bite.
- Espresso Powder (Optional) – Just a teaspoon enhances the cocoa flavor without making the bagels taste like coffee.
Other Essentials
- Water – Hydrates the dough and helps with fermentation.
- Baking Soda for Boiling – This gives the bagels their signature crust.
- Egg Wash (or Milk for a Dairy-Free Option) – Helps create a glossy finish.
If you love baking with chocolate, you might also enjoy these Matcha Pancakes—a fun way to mix sweet and earthy flavors into your breakfast!
Essential Tools for Baking These Bagels
Making Double Chocolate Chip Sourdough Bagels at home doesn’t require fancy equipment, but having the right tools makes the process easier. Here’s what you’ll need to get perfect, bakery-quality bagels every time.
For Mixing & Kneading
- Large Mixing Bowl – For combining your dough ingredients. If you’re using a stand mixer, this step becomes even easier.
- Stand Mixer with Dough Hook (Optional) – While you can knead by hand, a stand mixer makes it quicker and ensures an even dough consistency.
- Bench Scraper – Helps divide and shape the dough without it sticking to your hands.
For Shaping & Proofing
- Floured Surface or Silicone Mat – A clean area for shaping the bagels. The silicone mat helps prevent sticking.
- Damp Kitchen Towel or Plastic Wrap – Covers the dough while it proofs to prevent it from drying out.
- Baking Sheet & Parchment Paper – Keeps the bagels from sticking and makes cleanup easy.
For Boiling & Baking
- Large Pot of Boiling Water – This step is key for getting that chewy bagel texture.
- Slotted Spoon or Spider Strainer – Makes transferring bagels from the water to the baking sheet easy.
- Basting Brush – For applying the egg wash (or dairy-free alternative) before baking.
With these simple tools, you’re all set to bake the best chocolate bagels ever! If you love creative, homemade recipes, check out these Heart Jam Cookies—a sweet and buttery treat that’s perfect for any occasion.
How to Make Double Chocolate Chip Sourdough Bagels
Making Double Chocolate Chip Sourdough Bagels might seem like a big project, but trust me—it’s totally worth it. The process is simple: mix, ferment, shape, boil, and bake. Let’s break it down step by step.

Step 1: Make the Dough
- In a large mixing bowl, whisk together the sourdough starter, warm water, honey (or maple syrup), and cocoa powder until smooth.
- Add the flour and salt, then mix until a rough dough forms.
- Knead for about 8-10 minutes (or use a stand mixer) until the dough is smooth and elastic.
- Gently fold in the chocolate chips, distributing them evenly.
Step 2: First Rise (Bulk Fermentation)
- Place the dough in a greased bowl, cover, and let it rise at room temperature for 8-12 hours (overnight works great). It should double in size.
Step 3: Shape the Bagels
- Divide the dough into 8 equal pieces.
- Roll each piece into a ball, then poke a hole in the center and stretch it into a bagel shape.
- Place them on a parchment-lined baking sheet and cover. Let them rest for 30-60 minutes.
Step 4: Boil & Bake
- Bring a large pot of water to a boil and add 1 tablespoon of baking soda.
- Boil each bagel for 30 seconds per side, then place them back on the baking sheet.
- Brush with egg wash and bake at 400°F (200°C) for 20-22 minutes, or until firm and slightly crisp.
For another delicious homemade treat, check out these Honey Peach Cream Cheese Cupcakes—a fruity, creamy dessert that’s just as irresistible!
Swaps and Substitutions for Double Chocolate Chip Sourdough Bagels
Not everyone has the same pantry staples, and that’s okay! These Double Chocolate Chip Sourdough Bagels are super flexible, so you can swap ingredients to fit your dietary needs or flavor preferences.
Flour Substitutions
- Whole Wheat Flour – Want extra fiber? Swap up to 50% of the all-purpose flour for whole wheat. The texture will be slightly denser but still delicious.
- Gluten-Free Flour – Use a high-quality 1:1 gluten-free baking blend. The dough won’t be as stretchy, but the flavor will still be great.
Chocolate Options
- Milk Chocolate Chips – If you prefer a sweeter bagel, swap semi-sweet for milk chocolate.
- Dark Chocolate Chips – For an intense cocoa flavor, go for 70% or higher dark chocolate.
- White Chocolate Chips – Adds a creamy sweetness that pairs perfectly with cocoa.
Sugar Alternatives
- Coconut Sugar – A lower-glycemic alternative to brown sugar.
- Maple Syrup or Honey – Natural sweeteners that keep the dough moist and flavorful.
Dairy-Free & Vegan Adjustments
- Skip the egg wash and use almond milk or melted coconut oil for a glossy finish.
- Choose dairy-free chocolate chips for a completely vegan version.
Customizing your bagels is easy, so don’t be afraid to get creative! If you’re looking for another unique breakfast idea, try these Cinnamon Sugar French Toast Muffins—a sweet, handheld treat with all the flavors of classic French toast.
What to Serve with Double Chocolate Chip Sourdough Bagels
These Double Chocolate Chip Sourdough Bagels are already packed with flavor, but pairing them with the right spreads and drinks can take them to the next level. Whether you’re in the mood for something sweet, creamy, or fruity, here are some delicious serving ideas.

Best Spreads for These Bagels
- Cream Cheese – A classic! Try regular, honey-sweetened, or even chocolate-flavored cream cheese.
- Peanut Butter or Almond Butter – Perfect if you love that nutty, chocolatey combo.
- Nutella – Because double chocolate is never too much chocolate.
- Honey Butter – Sweet, creamy, and ridiculously good when spread over a warm, toasted bagel.
- Mascarpone with Berries – A fancy twist that balances the richness of the chocolate with fresh fruit.
Creative Serving Ideas
- Breakfast Sandwich: Slice the bagel in half and add banana slices and a drizzle of honey for a simple yet indulgent start to your day.
- Dessert-Style: Toast the bagel, spread on some Nutella, and top with crushed hazelnuts for a Ferrero Rocher-inspired treat.
- Ice Cream Bagel: Yes, you read that right! Sandwich a scoop of vanilla or coffee ice cream between two halves for a mind-blowing dessert.
Drinks That Pair Well
- Coffee (Espresso or Mocha) – Because nothing complements chocolate like coffee.
- Chai Latte – The warm spices play beautifully with the deep cocoa flavors.
- Almond or Oat Milk – A great dairy-free option that pairs well with the richness of these bagels.
For another delicious chocolate-inspired breakfast, check out these Matcha Brownies—a unique way to satisfy both chocolate and matcha cravings!
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Double Chocolate Chip Sourdough Bagels
- Total Time: 12 hours 45 minutes
- Yield: 8 bagels 1x
- Diet: Vegetarian
Description
You ever bite into something and instantly know it’s going to be your new obsession? That’s exactly what happens with Double Chocolate Chip Sourdough Bagels. They combine the rich, deep flavor of cocoa, the satisfying chew of sourdough, and melty chocolate chips in every bite.
Ingredients
- 1 cup active sourdough starter
- 3 ½ cups all-purpose flour
- ¼ cup Dutch-process cocoa powder
- 2 tbsp honey or maple syrup
- 1 tsp salt
- ¾ cup warm water
- ½ cup semi-sweet chocolate chips
- 1 tsp espresso powder (optional)
- 1 tbsp baking soda (for boiling)
- 1 egg (for egg wash)
Instructions
- In a large bowl, whisk together the sourdough starter, warm water, honey (or maple syrup), and cocoa powder.
- Add flour and salt, then mix until a dough forms.
- Knead for 8-10 minutes (or use a stand mixer) until smooth and elastic.
- Fold in chocolate chips.
- Place dough in a greased bowl, cover, and let rise for 8-12 hours at room temperature.
- Divide dough into 8 pieces, shape into bagels, and let rest for 30-60 minutes.
- Bring a large pot of water to a boil, add baking soda, and boil bagels for 30 seconds per side.
- Place on a baking sheet, brush with egg wash, and bake at 400°F (200°C) for 20-22 minutes.
Notes
These bagels have a perfect balance of rich chocolate flavor, chewy texture, and melty chocolate chips. Perfect for breakfast, brunch, or even dessert!
- Prep Time: 15 minutes
- Cook Time: 22 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 bagel
- Calories: 250
- Sugar: 10g
- Sodium: 320mg
- Fat: 6g
- Saturated Fat: 3g
- Unsaturated Fat: 2g
- Trans Fat: 0g
- Carbohydrates: 42g
- Fiber: 4g
- Protein: 7g
- Cholesterol: 15mg
Keywords: sourdough, bagels, chocolate, homemade bagels
FAQs About Double Chocolate Chip Sourdough Bagels
Got questions? Here are some common ones people ask when making Double Chocolate Chip Sourdough Bagels!
Are sourdough bagels healthier than regular bagels?
Yes! Sourdough bagels are easier to digest because of the natural fermentation process, which helps break down gluten and phytic acid. They also have a lower glycemic index than regular bagels, meaning they won’t spike your blood sugar as quickly.
Why are my sourdough bagels so chewy?
The chewiness comes from two key factors: gluten development and boiling. Kneading the dough properly strengthens the gluten, while boiling before baking creates that signature chewy crust. If your bagels are too chewy, try reducing the kneading time slightly.
Are sourdough bagels a thing?
Absolutely! Sourdough bagels are becoming more popular because they combine the tangy depth of sourdough with the satisfying texture of traditional bagels. If you haven’t tried making them yet, you’re in for a treat!
What do you eat chocolate sourdough with?
These bagels pair well with cream cheese, Nutella, peanut butter, or fresh fruit. For a fancy twist, try mascarpone cheese with a drizzle of honey.
What is the healthiest bagel to eat?
Whole grain or sprouted grain bagels are considered the healthiest because they contain more fiber, vitamins, and minerals. However, sourdough bagels are also a great choice due to their fermented nature, which aids digestion.
What is the healthiest bread to eat?
The healthiest options are whole grain, sourdough, and sprouted grain breads, as they provide fiber and essential nutrients while being easier to digest.
For another wholesome, homemade treat, check out these Whole Wheat Blueberry Muffins—a nutritious and delicious breakfast option!
Final Thoughts on Double Chocolate Chip Sourdough Bagels
If you love bagels and chocolate, these Double Chocolate Chip Sourdough Bagels are about to be your new favorite homemade treat. They’ve got everything—chewy texture, deep cocoa flavor, and melty chocolate chips in every bite. Plus, thanks to the sourdough fermentation, they’re not just delicious but also easier to digest than traditional bagels.
Making bagels from scratch might sound like a project, but trust me, once you try it, you’ll never look at store-bought bagels the same way again. The best part? You can enjoy these in so many ways—slathered with cream cheese, paired with peanut butter and bananas, or even as a decadent breakfast sandwich.
If you’ve got a sourdough starter sitting in your fridge, this is your sign to put it to good use! And if you’re looking for more creative sourdough recipes, you might love these Pumpkin Sourdough Pancakes—a perfect fall-inspired treat.
Now grab your chocolate chips and get baking! Your kitchen is about to smell amazing.